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Research article

An integrated study of threonine-pathway enzyme kinetics in Escherichia coli

Christophe CHASSAGNOLE, Badr RAÏS, Eric QUENTIN, David A. FELL, Jean-Pierre MAZAT
Biochemical Journal Jun 01, 2001, 356 (2) 415-423; DOI: 10.1042/bj3560415
Christophe CHASSAGNOLE
INSERM EMI 9929, University Victor Segalen Bordeaux 2, 146 rue Léo Saignat, 33076 Bordeaux, France
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Badr RAÏS
INSERM EMI 9929, University Victor Segalen Bordeaux 2, 146 rue Léo Saignat, 33076 Bordeaux, France
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Eric QUENTIN
Département de Biochimie Médicale et Biologie Moléculaire, University Victor Segalen Bordeaux 2, 33076 Bordeaux, France
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David A. FELL
INSERM EMI 9929, University Victor Segalen Bordeaux 2, 146 rue Léo Saignat, 33076 Bordeaux, FranceSchool of Biological and Molecular Sciences, Oxford Brookes University, Oxford OX3 0BP, U.K.
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Jean-Pierre MAZAT
INSERM EMI 9929, University Victor Segalen Bordeaux 2, 146 rue Léo Saignat, 33076 Bordeaux, France
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Abstract

We have determined the kinetic parameters of the individual steps of the threonine pathway from aspartate in Escherichia coli under a single set of experimental conditions chosen to be physiologically relevant. Our aim was to summarize the kinetic behaviour of each enzyme in a single tractable equation that takes into account the effect of the products as competitive inhibitors of the substrates in the forward reaction and also, when appropriate (e.g. near-equilibrium reactions), as substrates of the reverse reactions. Co-operative feedback inhibition by threonine and lysine was also included as necessary. We derived the simplest rate equations that describe the salient features of the enzymes in the physiological range of metabolite concentrations in order to incorporate them ultimately into a complete model of the threonine pathway, able to predict quantitatively the behaviour of the pathway under natural or engineered conditions.

  • amino acid
  • enzymology
  • model fitting
  • parameter estimation
  • rate equation

Footnotes

  • ↵1 Present address: Diosynth France, BP 26, 60590 Eragny-sur-Epte, France.

  • Abbreviations used: AK, aspartate kinase; aspp, β-aspartyl phosphate; ASD, aspartate semialdehyde dehydrogenase; ASA, d,l-aspartic β-semialdehyde; HDH, homoserine dehydrogenase; HK, homoserine kinase; LDH, lactate dehydrogenase; PK, pyruvate kinase; TS, threonine synthase.

  • The Biochemical Society, London ©2001
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June 2001

Volume: 356 Issue: 2

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An integrated study of threonine-pathway enzyme kinetics in Escherichia coli
Christophe CHASSAGNOLE, Badr RAÏS, Eric QUENTIN, David A. FELL, Jean-Pierre MAZAT
Biochemical Journal Jun 2001, 356 (2) 415-423; DOI: 10.1042/bj3560415
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An integrated study of threonine-pathway enzyme kinetics in Escherichia coli
Christophe CHASSAGNOLE, Badr RAÏS, Eric QUENTIN, David A. FELL, Jean-Pierre MAZAT
Biochemical Journal Jun 2001, 356 (2) 415-423; DOI: 10.1042/bj3560415

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Keywords

amino acid
enzymology
model fitting
parameter estimation
rate equation

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